IL_8UTI_017

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8UTI|1|A|U|534, 8UTI|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_017 not in the Motif Atlas

Homologous match to IL_8P9A_248

Geometric discrepancy: 0.1162

The information below is about IL_8P9A_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8UTI|1|A|G|531
8UTI|1|A|A|532
8UTI|1|A|A|533
8UTI|1|A|U|534
8UTI|1|A|G|535
8UTI|1|A|U|536
8UTI|1|A|A|537
8UTI|1|A|G|538
*
8UTI|1|A|U|553
8UTI|1|A|A|554
8UTI|1|A|U|555
8UTI|1|A|U|556
8UTI|1|A|A|557
8UTI|1|A|U|558
8UTI|1|A|A|559
8UTI|1|A|G|560
8UTI|1|A|C|561

Current chains

Chain A

25S rRNA

Nearby chains

Chain LO

60S ribosomal protein L14-A

Chain LU

60S ribosomal protein L20-A