IL_8UTI_067

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_067 not in the Motif Atlas

Homologous match to IL_8P9A_300

Geometric discrepancy: 0.0936

The information below is about IL_8P9A_300

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8UTI|1|A|U|1702
8UTI|1|A|U|1703
8UTI|1|A|A|1704
8UTI|1|A|U|1705
8UTI|1|A|C|1706
8UTI|1|A|A|1707
*
8UTI|1|A|U|1737
8UTI|1|A|C|1738
8UTI|1|A|U|1739
8UTI|1|A|U|1740
8UTI|1|A|A|1741
8UTI|1|A|U|1742
8UTI|1|A|G|1743

Current chains

Chain A

25S rRNA

Nearby chains

Chain Li

60S ribosomal protein L34-A

Chain Lr

60S ribosomal protein L43-A