IL_8UTI_087

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8UTI|1|A|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_087 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.0672

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8UTI|1|A|G|2409
8UTI|1|A|U|2410
8UTI|1|A|U|2411
*
8UTI|1|A|A|2811
8UTI|1|A|C|2812

Current chains

Chain A

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain Lc

60S ribosomal protein L28

Chain z

Cytoplasmic 60S subunit biogenesis factor REH1 (N-terminal 3xFLAG tag)