IL_8UTI_105

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8UTI|1|A|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_105 not in the Motif Atlas

Homologous match to IL_8C3A_119

Geometric discrepancy: 0.1134

The information below is about IL_8C3A_119

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8UTI|1|A|U|2891
8UTI|1|A|A|2892
*
8UTI|1|A|U|2909
8UTI|1|A|A|2910
8UTI|1|A|A|2911
8UTI|1|A|G|2912

Current chains

Chain A

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L9-A

Chain LQ

60S ribosomal protein L16-A

Chain Lo

60S ribosomal protein L40-A