IL_8UTI_107

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8UTI|1|A|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_107 not in the Motif Atlas

Geometric match to IL_5TBW_060

Geometric discrepancy: 0.3366

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8UTI|1|A|C|2960
8UTI|1|A|G|2961
*
8UTI|1|A|C|2970
8UTI|1|A|A|2971
8UTI|1|A|G|2972

Current chains

Chain A

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LL

60S ribosomal protein L10

Chain m

Transfer RNA; tRNA

Chain n

Transfer RNA; tRNA