IL_8UTI_165

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8UTI|1|E|A|541, 8UTI|1|E|A|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_165 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.276

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8UTI|1|E|G|514
8UTI|1|E|A|515
8UTI|1|E|G|516
*
8UTI|1|E|C|536
8UTI|1|E|G|537
8UTI|1|E|A|538
8UTI|1|E|G|539
8UTI|1|E|G|540
8UTI|1|E|A|541
8UTI|1|E|A|542
8UTI|1|E|C|543

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sg

40S ribosomal protein S30-A