IL_8UTI_169

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8UTI|1|E|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_169 not in the Motif Atlas

Homologous match to IL_8P9A_403

Geometric discrepancy: 0.2377

The information below is about IL_8P9A_403

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8UTI|1|E|G|557
8UTI|1|E|U|558
8UTI|1|E|C|559
*
8UTI|1|E|G|586
8UTI|1|E|C|587

Current chains

Chain E

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein S3

Chain Sg

40S ribosomal protein S30-A