IL_8UTI_171

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8UTI|1|E|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_171 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1248

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8UTI|1|E|G|616
8UTI|1|E|U|617
8UTI|1|E|U|618
8UTI|1|E|A|619
8UTI|1|E|A|620
8UTI|1|E|A|621
8UTI|1|E|A|622
*
8UTI|1|E|U|1104
8UTI|1|E|C|1105

Current chains

Chain E

18S rRNA

Nearby chains

Chain Sc

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S26-B