IL_8UTI_180

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTI_180 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.1223

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8UTI|1|E|A|865
8UTI|1|E|G|866
*
8UTI|1|E|C|962
8UTI|1|E|A|963
8UTI|1|E|U|964
8UTI|1|E|U|965

Current chains

Chain E

18S rRNA

Nearby chains

Chain SY

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S22-A

Chain Sf

40S ribosomal protein S27-A