IL_8UTI_223
3D structure
- PDB id
- 8UTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with Reh1 and A/P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.13 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UTI_223 not in the Motif Atlas
- Homologous match to IL_8C3A_478
- Geometric discrepancy: 0.072
- The information below is about IL_8C3A_478
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8UTI|1|E|U|1669
8UTI|1|E|G|1670
8UTI|1|E|A|1671
8UTI|1|E|G|1672
*
8UTI|1|E|C|1729
8UTI|1|E|A|1730
8UTI|1|E|A|1731
8UTI|1|E|A|1732
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LY
- 60S ribosomal protein L24-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
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