IL_8UTJ_130

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_130 not in the Motif Atlas

Geometric match to IL_4LFB_013

Geometric discrepancy: 0.1711

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8UTJ|1|2|G|292
8UTJ|1|2|G|293
*
8UTJ|1|2|U|304
8UTJ|1|2|G|305
8UTJ|1|2|A|306
8UTJ|1|2|C|307
8UTJ|1|2|C|308

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain u

30S ribosomal protein S16