IL_8UTJ_134

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_134 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.1254

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8UTJ|1|2|U|409
8UTJ|1|2|G|410
8UTJ|1|2|A|411
8UTJ|1|2|A|412
8UTJ|1|2|G|413
8UTJ|1|2|A|414
8UTJ|1|2|A|415
8UTJ|1|2|G|416
*
8UTJ|1|2|U|427
8UTJ|1|2|G|428
8UTJ|1|2|U|429
8UTJ|1|2|A|430
8UTJ|1|2|A|431
8UTJ|1|2|A|432
8UTJ|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4