IL_8UTJ_145

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_145 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.1263

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

8UTJ|1|2|G|654
8UTJ|1|2|A|655
*
8UTJ|1|2|U|751
8UTJ|1|2|G|752
8UTJ|1|2|A|753
8UTJ|1|2|C|754

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS8

Chain t

30S ribosomal protein S15