IL_8UTJ_172

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_172 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.1298

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8UTJ|1|2|C|1303
8UTJ|1|2|G|1304
8UTJ|1|2|G|1305
8UTJ|1|2|A|1306
8UTJ|1|2|U|1307
8UTJ|1|2|U|1308
*
8UTJ|1|2|A|1329
8UTJ|1|2|U|1330
8UTJ|1|2|G|1331
8UTJ|1|2|A|1332
8UTJ|1|2|A|1333
8UTJ|1|2|G|1334

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13