IL_8UTJ_187

3D structure

PDB id

8UTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UTJ_187 not in the Motif Atlas

Geometric match to IL_4PDQ_001

Geometric discrepancy: 0.1261

The information below is about IL_4PDQ_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8UTJ|1|5|G|29
8UTJ|1|5|U|30
8UTJ|1|5|C|31
*
8UTJ|1|5|G|39
8UTJ|1|5|U|40
8UTJ|1|5|C|41

Current chains

Chain 5

Lys-tRNA^proL

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Small ribosomal subunit protein uS9

Chain r

30S ribosomal protein S13