IL_8UU4_006
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_006 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0744
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8UU4|1|A|G|190
8UU4|1|A|G|191
8UU4|1|A|A|192
8UU4|1|A|A|193
8UU4|1|A|C|194
8UU4|1|A|U|195
8UU4|1|A|G|196
*
8UU4|1|A|C|203
8UU4|1|A|U|204
8UU4|1|A|A|205
8UU4|1|A|A|206
8UU4|1|A|G|207
8UU4|1|A|U|208
8UU4|1|A|A|209
8UU4|1|A|C|210
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain 7
- Large ribosomal subunit protein bL35
- Chain N
- Large ribosomal subunit protein uL15
- Chain Z
- Large ribosomal subunit protein bL28
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