IL_8UU4_007

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_007 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0807

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

8UU4|1|A|C|240
8UU4|1|A|U|241
8UU4|1|A|G|242
8UU4|1|A|A|243
8UU4|1|A|G|244
8UU4|1|A|U|245
8UU4|1|A|A|246
8UU4|1|A|G|247
*
8UU4|1|A|C|255
8UU4|1|A|G|256
8UU4|1|A|A|257
8UU4|1|A|A|258
8UU4|1|A|A|259
8UU4|1|A|C|260
8UU4|1|A|G|261

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain N

Large ribosomal subunit protein uL15