IL_8UU4_026

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AG*UAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_026 not in the Motif Atlas

Homologous match to IL_7A0S_024

Geometric discrepancy: 0.2684

The information below is about IL_7A0S_024

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_79144.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8UU4|1|A|A|894
8UU4|1|A|G|895
*
8UU4|1|A|U|977
8UU4|1|A|A|978
8UU4|1|A|U|979

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30