IL_8UU4_028
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_028 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.0695
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UU4|1|A|G|903
8UU4|1|A|A|904
8UU4|1|A|G|905
8UU4|1|A|G|906
8UU4|1|A|U|907
8UU4|1|A|A|908
8UU4|1|A|G|909
*
8UU4|1|A|C|962
8UU4|1|A|G|963
8UU4|1|A|A|964
8UU4|1|A|A|965
8UU4|1|A|U|966
8UU4|1|A|G|967
8UU4|1|A|C|968
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein uL30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- Large ribosomal subunit protein uL16
- Chain Y
- Large ribosomal subunit protein bL27
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