IL_8UU4_044

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8UU4|1|A|A|1134

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_044 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.326

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU4|1|A|G|1133
8UU4|1|A|A|1134
8UU4|1|A|G|1135
8UU4|1|A|U|1136
8UU4|1|A|G|1137
*
8UU4|1|A|C|1146
8UU4|1|A|U|1147
8UU4|1|A|C|1148

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6