IL_8UU4_049
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUGAGUAG*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_049 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.0764
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
8UU4|1|A|A|1307
8UU4|1|A|U|1308
8UU4|1|A|G|1309
8UU4|1|A|A|1310
8UU4|1|A|G|1311
8UU4|1|A|U|1312
8UU4|1|A|A|1313
8UU4|1|A|G|1314
*
8UU4|1|A|U|2044
8UU4|1|A|G|2045
8UU4|1|A|A|2046
8UU4|1|A|A|2047
8UU4|1|A|A|2048
8UU4|1|A|U|2049
8UU4|1|A|U|2050
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain E
- Large ribosomal subunit protein uL4
- Chain U
- Large ribosomal subunit protein uL22
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