IL_8UU4_067
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8UU4|1|A|G|1748
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU4_067 not in the Motif Atlas
- Geometric match to IL_7RQB_068
- Geometric discrepancy: 0.0801
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
8UU4|1|A|C|1735
8UU4|1|A|G|1736
8UU4|1|A|U|1737
8UU4|1|A|A|1738
8UU4|1|A|A|1739
8UU4|1|A|C|1740
*
8UU4|1|A|G|1745
8UU4|1|A|G|1746
8UU4|1|A|A|1747
8UU4|1|A|G|1748
8UU4|1|A|A|1749
8UU4|1|A|A|1750
8UU4|1|A|G|1751
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: