IL_8UU4_068

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUUAG*CGAGA

Length

11 nucleotides

Bulged bases

8UU4|1|A|U|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_068 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.2032

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8UU4|1|A|U|1760
8UU4|1|A|A|1761
8UU4|1|A|U|1762
8UU4|1|A|U|1763
8UU4|1|A|A|1764
8UU4|1|A|G|1765
*
8UU4|1|A|C|1776
8UU4|1|A|G|1777
8UU4|1|A|A|1778
8UU4|1|A|G|1779
8UU4|1|A|A|1780

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA