IL_8UU4_099

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_099 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1068

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8UU4|1|A|C|2499
8UU4|1|A|C|2500
8UU4|1|A|A|2501
8UU4|1|A|A|2502
8UU4|1|A|G|2503
*
8UU4|1|A|C|2513
8UU4|1|A|G|2514
8UU4|1|A|A|2515
8UU4|1|A|C|2516
8UU4|1|A|G|2517

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain O

Large ribosomal subunit protein uL16