IL_8UU4_112

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CGGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_112 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.3382

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8UU4|1|A|G|2872
8UU4|1|A|G|2873
8UU4|1|A|A|2874
8UU4|1|A|G|2875
*
8UU4|1|A|C|2899
8UU4|1|A|G|2900
8UU4|1|A|G|2901
8UU4|1|A|A|2902
8UU4|1|A|C|2903

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain P

Large ribosomal subunit protein bL17

Chain R

Large ribosomal subunit protein bL19