IL_8UU4_137

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*CGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_137 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2031

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8UU4|1|a|U|417
8UU4|1|a|G|418
8UU4|1|a|A|419
8UU4|1|a|A|420
8UU4|1|a|G|421
8UU4|1|a|A|422
8UU4|1|a|A|423
8UU4|1|a|G|424
*
8UU4|1|a|C|435
8UU4|1|a|G|436
8UU4|1|a|U|437
8UU4|1|a|A|438
8UU4|1|a|A|439
8UU4|1|a|A|440
8UU4|1|a|G|441

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4