IL_8UU4_169

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_169 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.2552

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

8UU4|1|a|C|1138
8UU4|1|a|A|1139
8UU4|1|a|G|1140
8UU4|1|a|C|1141
*
8UU4|1|a|G|1150
8UU4|1|a|G|1151

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9