IL_8UU4_174

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_174 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1664

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UU4|1|a|C|1310
8UU4|1|a|G|1311
8UU4|1|a|G|1312
8UU4|1|a|A|1313
8UU4|1|a|U|1314
8UU4|1|a|U|1315
*
8UU4|1|a|A|1336
8UU4|1|a|U|1337
8UU4|1|a|G|1338
8UU4|1|a|A|1339
8UU4|1|a|A|1340
8UU4|1|a|G|1341

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13