IL_8UU4_178

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU4_178 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2864

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8UU4|1|a|C|1414
8UU4|1|a|A|1415
8UU4|1|a|C|1416
*
8UU4|1|a|G|1499
8UU4|1|a|A|1500
8UU4|1|a|A|1501
8UU4|1|a|G|1502

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

Small ribosomal subunit protein uS12

Chain w

Ribosome hibernation promoting factor