IL_8UU5_027

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UC*GUA

Length

5 nucleotides

Bulged bases

8UU5|1|A|U|973

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_027 not in the Motif Atlas

Geometric match to IL_4KZD_001

Geometric discrepancy: 0.2637

The information below is about IL_4KZD_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8UU5|1|A|U|898
8UU5|1|A|C|899
*
8UU5|1|A|G|972
8UU5|1|A|U|973
8UU5|1|A|A|974

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30

Chain Y

Large ribosomal subunit protein bL27