IL_8UU5_066

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8UU5|1|A|G|2025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_066 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.0953

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8UU5|1|A|A|1718
8UU5|1|A|C|1719
8UU5|1|A|U|1720
8UU5|1|A|C|1721
8UU5|1|A|G|1722
8UU5|1|A|G|1723
*
8UU5|1|A|C|2023
8UU5|1|A|U|2024
8UU5|1|A|G|2025
8UU5|1|A|U|2026

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain M

Large ribosomal subunit protein uL14