IL_8UU5_076

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_076 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1364

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8UU5|1|A|U|1897
8UU5|1|A|U|1898
8UU5|1|A|A|1899
8UU5|1|A|G|1900
*
8UU5|1|A|C|1907
8UU5|1|A|G|1908
8UU5|1|A|A|1909
8UU5|1|A|A|1910
8UU5|1|A|G|1911

Current chains

Chain A

23S Ribosomal RNA

Nearby chains