IL_8UU5_093

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_093 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0852

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8UU5|1|A|C|2383
8UU5|1|A|G|2384
8UU5|1|A|A|2385
8UU5|1|A|G|2386
*
8UU5|1|A|C|2397
8UU5|1|A|G|2398
8UU5|1|A|A|2399
8UU5|1|A|G|2400

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain Y

Large ribosomal subunit protein bL27