IL_8UU5_100

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_100 not in the Motif Atlas

Homologous match to IL_4WF9_094

Geometric discrepancy: 0.094

The information below is about IL_4WF9_094

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8UU5|1|A|C|2540
8UU5|1|A|G|2541
*
8UU5|1|A|U|2613
8UU5|1|A|G|2614
8UU5|1|A|G|2615

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3