IL_8UU5_112
3D structure
- PDB id
- 8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAG*CGGAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU5_112 not in the Motif Atlas
- Homologous match to IL_5J7L_353
- Geometric discrepancy: 0.271
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8UU5|1|A|G|2872
8UU5|1|A|G|2873
8UU5|1|A|A|2874
8UU5|1|A|G|2875
*
8UU5|1|A|C|2899
8UU5|1|A|G|2900
8UU5|1|A|G|2901
8UU5|1|A|A|2902
8UU5|1|A|C|2903
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain P
- Large ribosomal subunit protein bL17
- Chain R
- Large ribosomal subunit protein bL19
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