3D structure

PDB id
8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UG*CCAGA
Length
7 nucleotides
Bulged bases
8UU5|1|a|A|503
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8UU5_139 not in the Motif Atlas
Geometric match to IL_4KQY_004
Geometric discrepancy: 0.3048
The information below is about IL_4KQY_004
Detailed Annotation
Minor groove platform
Broad Annotation
Minor groove platform
Motif group
IL_94991.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
15

Unit IDs

8UU5|1|a|U|448
8UU5|1|a|G|449
*
8UU5|1|a|C|501
8UU5|1|a|C|502
8UU5|1|a|A|503
8UU5|1|a|G|504
8UU5|1|a|A|505

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain d
Small ribosomal subunit protein uS4

Coloring options:


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