IL_8UU5_156

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_156 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0966

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8UU5|1|a|C|787
8UU5|1|a|A|788
8UU5|1|a|A|789
8UU5|1|a|A|790
8UU5|1|a|C|791
*
8UU5|1|a|G|807
8UU5|1|a|G|808
8UU5|1|a|U|809
8UU5|1|a|A|810
8UU5|1|a|G|811

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

Small ribosomal subunit protein uS11