IL_8UU5_169

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAG,CUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_169 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3312

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8UU5|1|a|U|1131
8UU5|1|a|A|1132
8UU5|1|a|G|1133
*
8UU5|1|a|C|1157
8UU5|1|a|U|1158
8UU5|1|a|A|1159

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS9

Chain j

Small ribosomal subunit protein uS10