IL_8UU5_175

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU5_175 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2905

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8UU5|1|a|C|1266
8UU5|1|a|G|1267
8UU5|1|a|A|1268
8UU5|1|a|A|1269
8UU5|1|a|G|1270
*
8UU5|1|a|U|1279
8UU5|1|a|G|1280
8UU5|1|a|G|1281
8UU5|1|a|A|1282
8UU5|1|a|G|1283

Current chains

Chain a

16S Ribosomal RNA

Nearby chains