IL_8UU6_100

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_100 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.1176

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8UU6|1|A|A|2492
8UU6|1|A|U|2493
8UU6|1|A|C|2494
*
8UU6|1|A|G|2522
8UU6|1|A|G|2523
8UU6|1|A|U|2524
8UU6|1|A|U|2525
8UU6|1|A|U|2526

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL16