IL_8UU6_162

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8UU6|1|a|C|1063

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_162 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.1124

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8UU6|1|a|U|1061
8UU6|1|a|G|1062
8UU6|1|a|C|1063
8UU6|1|a|A|1064
8UU6|1|a|U|1065
*
8UU6|1|a|A|1211
8UU6|1|a|U|1212
8UU6|1|a|G|1213

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3

Chain j

Small ribosomal subunit protein uS10

Chain n

Small ribosomal subunit protein uS14