IL_8UU6_187

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAGU*AUGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_187 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.3794

The information below is about IL_7A0S_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8UU6|1|A|U|1525
8UU6|1|A|G|1526
8UU6|1|A|A|1527
8UU6|1|A|G|1528
8UU6|1|A|U|1529
*
8UU6|1|A|A|1563
8UU6|1|A|U|1564
8UU6|1|A|G|1565
8UU6|1|A|A|1566
8UU6|1|A|G|1567

Current chains

Chain A

23S Ribosomal RNA

Nearby chains