IL_8UU6_189

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU6_189 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1013

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8UU6|1|A|G|1715
8UU6|1|A|G|1716
8UU6|1|A|A|1717
8UU6|1|A|A|1718
8UU6|1|A|C|1719
8UU6|1|A|U|1720
8UU6|1|A|C|1721
8UU6|1|A|G|1722
8UU6|1|A|G|1723
*
8UU6|1|A|C|2023
8UU6|1|A|U|2024
8UU6|1|A|G|2025
8UU6|1|A|U|2026
8UU6|1|A|C|2027

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain M

Large ribosomal subunit protein uL14