IL_8UU7_028

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UC*GUA

Length

5 nucleotides

Bulged bases

8UU7|1|A|U|973

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_028 not in the Motif Atlas

Geometric match to IL_4KZD_001

Geometric discrepancy: 0.339

The information below is about IL_4KZD_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8UU7|1|A|U|898
8UU7|1|A|C|899
*
8UU7|1|A|G|972
8UU7|1|A|U|973
8UU7|1|A|A|974

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein uL30

Chain Y

Large ribosomal subunit protein bL27