IL_8UU7_101
3D structure
- PDB id
- 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU7_101 not in the Motif Atlas
- Homologous match to IL_4WF9_093
- Geometric discrepancy: 0.1283
- The information below is about IL_4WF9_093
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8UU7|1|A|C|2499
8UU7|1|A|C|2500
8UU7|1|A|A|2501
8UU7|1|A|A|2502
8UU7|1|A|G|2503
*
8UU7|1|A|C|2513
8UU7|1|A|G|2514
8UU7|1|A|A|2515
8UU7|1|A|C|2516
8UU7|1|A|G|2517
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL36
- Chain O
- Large ribosomal subunit protein uL16
- Chain v
- GTPase HflX
Coloring options: