IL_8UU7_113
3D structure
- PDB id
- 8UU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUAAA*UGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 8UU7|1|A|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU7_113 not in the Motif Atlas
- Homologous match to IL_7RQB_107
- Geometric discrepancy: 0.1025
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UU7|1|A|G|2770
8UU7|1|A|A|2771
8UU7|1|A|U|2772
8UU7|1|A|A|2773
8UU7|1|A|A|2774
8UU7|1|A|A|2775
*
8UU7|1|A|U|2795
8UU7|1|A|G|2796
8UU7|1|A|A|2797
8UU7|1|A|A|2798
8UU7|1|A|G|2799
8UU7|1|A|C|2800
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL36
- Chain G
- Large ribosomal subunit protein uL6
- Chain L
- Large ribosomal subunit protein uL13
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