IL_8UU7_117

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

8UU7|1|B|U|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_117 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.226

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8UU7|1|B|C|15
8UU7|1|B|G|16
*
8UU7|1|B|C|63
8UU7|1|B|U|64
8UU7|1|B|G|65

Current chains

Chain B

5S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Q

Large ribosomal subunit protein uL18