IL_8UU7_136

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UGAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU7_136 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1388

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8UU7|1|a|G|300
8UU7|1|a|A|301
*
8UU7|1|a|U|312
8UU7|1|a|G|313
8UU7|1|a|A|314
8UU7|1|a|U|315
8UU7|1|a|C|316

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16