IL_8UU9_004
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGAG*CGUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 8UU9|1|A|U|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU9_004 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.1296
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
8UU9|1|A|G|81
8UU9|1|A|G|82
8UU9|1|A|G|83
8UU9|1|A|A|84
8UU9|1|A|G|85
*
8UU9|1|A|C|97
8UU9|1|A|G|98
8UU9|1|A|U|99
8UU9|1|A|U|100
8UU9|1|A|G|101
8UU9|1|A|A|102
8UU9|1|A|U|103
8UU9|1|A|C|104
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL29
- Chain W
- Large ribosomal subunit protein uL24
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