IL_8UU9_017

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_017 not in the Motif Atlas

Geometric match to IL_4WF9_020

Geometric discrepancy: 0.0696

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8UU9|1|A|C|718
8UU9|1|A|C|719
8UU9|1|A|G|720
*
8UU9|1|A|C|852
8UU9|1|A|U|853
8UU9|1|A|G|854

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain N

Large ribosomal subunit protein uL15